Teem: Tools to process and visualize scientific data and images

SourceForge Project: teem

air

dye

ell

ten

Getting Teem

The Download page provides links to the software, available either as source or as pre-built libraries and executables.

What Is Teem?

Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data. Teem includes command-line tools that permit the library functions to be quickly applied to files and streams, without having to write any code. The most important and useful libraries in Teem are:

Nrrd (and the unu command-line tool on top of it) supports a range of operations for transforming N-dimensional raster data (resample, crop, slice, project, histogram, etc.), as well as the NRRD file format for storing arrays and their meta-information.
Gage: fast convolution-based measurements at arbitrary point locations in volume datasets (scalar, vector, tensor, etc.)
Mite: a multi-threaded ray-casting volume render with transfer functions based on any quantity Gage can measure
Ten: for estimating, processing, and visualizing diffusion tensor fields, including fiber tractography methods.

Strengths of Teem

Teem works: Its purpose is to enable research in visualization and image processing, and research is enabled when simple things are simple to do. Teem's functionality and its ease of use have allowed it to become a component of larger research software projects, such as SCIRun and 3D Slicer.
Teem is light-weight: The libraries are written with an eye towards minimizing the annoyance of getting data in an out, by using the simplest possible constructs for the job, and by supporting combinations of operations that arise in common practice.
Teem is coherent: There is a consistent logic to how information is represented, and uniformity in the APIs across libraries.
Teem is portable: All the code is written in plain C, so it compiles everywhere, including Windows, using either CMake or GNU Make.
Teem is growing: Some Teem libraries were created years ago and have remained stable, but new libraries and new functionality are continually being added.
Teem is open source: Anyone can use it, and contributions are welcome. Teem is licensed under the GNU Lesser General Public License, plus exceptions which facilitate linking Teem into binary-only applications.

Other Information

NOTE: This and all other pages in this documentation are incomplete, and often out-of-date. My apologies. The quality and content of this documentation will be improved as time permits.
Who helped create Teem
The teem-users mailing list is the primary venue for discussions on using Teem and consideration of changes and directions of new development.
General information about teem.
Naming scheme. Why all the libraries have such curious names.
Building teem, the basics. Supported platforms are: GNU/Linux, Cygwin, Irix (n32, 64), Solaris, Windows, Mac OS X.

Libraries in Teem

air : Core utilities and macros	hest : Command-line parsing	biff : Error message collection
ell : Linear algebra functions and macros.	nrrd : N-dimensional image processing	unrrdu : Command-line utilities based on nrrd
dye : Color representation and conversion	moss : Geometric transforms and sampling of images	gage : Filtered point-sampling in volumes
bane : Re-Implementation of my MS thesis (and VolVis98 paper)	limn : Graphics and drawing	hoover : Simple volume rendering framework.
mite : Simple scalar volume renderer	echo : Ray-tracer	ten : Diffusion tensor analysis and visualization

Information about the command-line tools:

bins : qbert, mrender, vprobe, and others.